BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022E03LP1|AL427907
(832 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig733 1616 0.0
>3x_Contig733
Length = 3667
Score = 1616 bits (815), Expect = 0.0
Identities = 831/834 (99%), Gaps = 3/834 (0%)
Strand = Plus / Minus
Query: 1 atcgagtggatatctctcagatggactcaattgcgta--cattggcggntctctatcact 58
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 2070 atcgagtggatatctctcagatggactcaattgcgtagccattggcgg-tctctatcact 2012
Query: 59 ggttggagcctttgatagattggacactctttgatagattggacactcatgcaaagaaat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 ggttggagcctttgatagattggacactctttgatagattggacactcatgcaaagaaat 1952
Query: 119 gtgacaggtgcaagatggtttctcattatatatacattaggtgcctggcttggcagccaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 gtgacaggtgcaagatggtttctcattatatatacattaggtgcctggcttggcagccaa 1892
Query: 179 aaaaaattgagatgttttatctctcagatttctgaggggtagatatgagattacaaaatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 aaaaaattgagatgttttatctctcagatttctgaggggtagatatgagattacaaaatt 1832
Query: 239 ctggccacattaaatccaccttacgcttccttctcagccgcagttcattgtgtaactttc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 ctggccacattaaatccaccttacgcttccttctcagccgcagttcattgtgtaactttc 1772
Query: 299 tgctgcctgacaatacgaatacgaatgcgaagatgtgttatcaagcaagtgacaggaaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 tgctgcctgacaatacgaatacgaatgcgaagatgtgttatcaagcaagtgacaggaaac 1712
Query: 359 aatgatacatcctcttggctatcgaaagtcgacactggcttgcagtacataaacattcgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 aatgatacatcctcttggctatcgaaagtcgacactggcttgcagtacataaacattcgc 1652
Query: 419 cggtttttataagattattcttcgaacgataaaacgatgtgatgatcttaaaacgaaaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 cggtttttataagattattcttcgaacgataaaacgatgtgatgatcttaaaacgaaaat 1592
Query: 479 gacgtattctgtatcatttcccctcctctcgagcaagagaatatcacggaatggctaatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 gacgtattctgtatcatttcccctcctctcgagcaagagaatatcacggaatggctaatt 1532
Query: 539 cttatatattaggttgttggtgccgcagtaccatgtgcgatagcggatattccaaaatac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 cttatatattaggttgttggtgccgcagtaccatgtgcgatagcggatattccaaaatac 1472
Query: 599 ccactagaaccaaaacccaagaagggtccagacgtttcttggtgcctttcgactttttgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 ccactagaaccaaaacccaagaagggtccagacgtttcttggtgcctttcgactttttgt 1412
Query: 659 ttttgttttgccgttctggtctaggtacgaatgaaggaacatgaaaaacgactagtctcg 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 ttttgttttgccgttctggtctaggtacgaatgaaggaacatgaaaaacgactagtctcg 1352
Query: 719 tagtgaatcacgatgttcagaaaatcacataacggaatgatggtataaaatcgaagaacc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 tagtgaatcacgatgttcagaaaatcacataacggaatgatggtataaaatcgaagaacc 1292
Query: 779 cgttagtacactcatggtggggaaaaccattaaacgaatagatcagcacggtaa 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 cgttagtacactcatggtggggaaaaccattaaacgaatagatcagcacggtaa 1238
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6062
Number of Sequences: 1807
Number of extensions: 6062
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 832
length of database: 10,358,551
effective HSP length: 16
effective length of query: 816
effective length of database: 10,329,639
effective search space: 8428985424
effective search space used: 8428985424
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)